STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ51280.1Aspartyl protease. (443 aa)    
Predicted Functional Partners:
aspC2
Aspartate aminotransferase.
    
  0.684
SDI70278.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.668
SDK08688.1
EamA domain-containing membrane protein RarD.
  
 
   0.604
SDK03330.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.598
SDJ70516.1
Hypothetical protein.
  
   0.562
SDJ44020.1
Hypothetical protein.
  
   0.524
SDJ09142.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.512
SDI54565.1
Protein of unknown function.
  
 
   0.482
SDI49188.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.475
SDI52403.1
Hypothetical protein.
  
     0.467
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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