STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ53401.1Lipopolysaccharide transport system ATP-binding protein. (438 aa)    
Predicted Functional Partners:
SDJ53447.1
Lipopolysaccharide transport system permease protein.
 
 0.999
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.814
wza
Protein involved in gliding motility EpsA.
 
  
 0.813
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
  
 0.782
SDJ53360.1
Hypothetical protein.
       0.779
SDJ53760.1
Polysaccharide export outer membrane protein.
  
  
 0.643
SDI69646.1
Uncharacterised nucleotidyltransferase.
  
  
 0.642
SDJ53130.1
Glycosyltransferase, GT2 family.
 
  
 0.632
SDI78180.1
comF family protein.
   
    0.617
SDJ53096.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.609
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.