STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ56348.1Starch-binding associating with outer membrane. (566 aa)    
Predicted Functional Partners:
SDJ56318.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   
 0.963
SDJ56390.1
Hypothetical protein.
   
   0.799
parB
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.757
SDI87727.1
Iron complex outermembrane recepter protein; Manually curated.
  
     0.599
SDJ42876.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.587
SDI87765.1
Starch-binding associating with outer membrane.
  
     0.564
SDJ56426.1
23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.542
SDI51811.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.527
SDI65001.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.517
aspS-2
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
  
    0.504
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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