STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ56703.1Tetratricopeptide repeat-containing protein. (232 aa)    
Predicted Functional Partners:
SDI76540.1
Hypothetical protein.
 
     0.774
SDI88353.1
Protein involved in gliding motility RemB.
  
     0.763
capK
phenylacetate-CoA ligase.
  
     0.753
SDJ52225.1
O-Antigen ligase.
  
     0.725
SDI71600.1
Tetratricopeptide repeat-containing protein.
  
     0.722
SDJ52304.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.721
SDI95530.1
Exosortase F-associated protein.
  
     0.716
SDJ56664.1
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase.
       0.715
SDI69930.1
Hypothetical protein.
  
     0.713
SDJ75092.1
Methyltransferase domain-containing protein.
  
    0.711
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.