STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ57407.1phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein. (253 aa)    
Predicted Functional Partners:
SDJ57375.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SDJ88833.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.987
SDJ01502.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
 0.981
SDJ01431.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.954
SDJ01467.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
  
 
0.894
SDI50776.1
Putative ABC transport system permease protein.
 
      0.694
rpsI
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
  
     0.592
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.586
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.555
SDJ57340.1
Glycosyl transferase family 2.
       0.551
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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