Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDJ64017.1 | rplM | SAMN05192550_2480 | SAMN05192550_0994 | Heat shock protein Hsp15. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.823 |
| SDJ64017.1 | rplN | SAMN05192550_2480 | SAMN05192550_2328 | Heat shock protein Hsp15. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.823 |
| SDJ64017.1 | rplQ | SAMN05192550_2480 | SAMN05192550_2311 | Heat shock protein Hsp15. | LSU ribosomal protein L17P. | 0.842 |
| SDJ64017.1 | rplS | SAMN05192550_2480 | SAMN05192550_1656 | Heat shock protein Hsp15. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.879 |
| SDJ64017.1 | rplT | SAMN05192550_2480 | SAMN05192550_3320 | Heat shock protein Hsp15. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.823 |
| SDJ64017.1 | rplU | SAMN05192550_2480 | SAMN05192550_0955 | Heat shock protein Hsp15. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.822 |
| SDJ64017.1 | rplV | SAMN05192550_2480 | SAMN05192550_2333 | Heat shock protein Hsp15. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.823 |
| SDJ64017.1 | rpmB | SAMN05192550_2480 | SAMN05192550_3207 | Heat shock protein Hsp15. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.839 |
| SDJ64017.1 | rpmF | SAMN05192550_2480 | SAMN05192550_0830 | Heat shock protein Hsp15. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.822 |
| SDJ64017.1 | rpmH | SAMN05192550_2480 | SAMN05192550_1599 | Heat shock protein Hsp15. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.839 |
| rplM | SDJ64017.1 | SAMN05192550_0994 | SAMN05192550_2480 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Heat shock protein Hsp15. | 0.823 |
| rplM | rplN | SAMN05192550_0994 | SAMN05192550_2328 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplM | rplQ | SAMN05192550_0994 | SAMN05192550_2311 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L17P. | 0.999 |
| rplM | rplS | SAMN05192550_0994 | SAMN05192550_1656 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplM | rplT | SAMN05192550_0994 | SAMN05192550_3320 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplM | rplU | SAMN05192550_0994 | SAMN05192550_0955 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rplV | SAMN05192550_0994 | SAMN05192550_2333 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplM | rpmB | SAMN05192550_0994 | SAMN05192550_3207 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
| rplM | rpmF | SAMN05192550_0994 | SAMN05192550_0830 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplM | rpmH | SAMN05192550_0994 | SAMN05192550_1599 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.999 |
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