STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBalpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (575 aa)    
Predicted Functional Partners:
SDJ64478.1
Glycosyl hydrolase family 67 N-terminus.
 
     0.801
SDJ64562.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
     0.758
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
  0.701
xynA
Endo-1,4-beta-xylanase.
 
  
  0.687
SDJ64594.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
 
     0.670
SDJ65394.1
Glycosyl hydrolase family 115.
 
     0.661
SDJ64325.1
Oligosaccharide reducing-end xylanase.
     0.629
SDJ64433.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.629
SDJ64363.1
Protein of unknown function.
 
  
  0.611
SDJ64295.1
Enterochelin esterase.
 
  
  0.599
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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