STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ66665.1Calcineurin-like phosphoesterase. (1243 aa)    
Predicted Functional Partners:
SDJ66632.1
HD domain-containing protein.
 
     0.909
SDJ66601.1
Hypothetical protein.
 
     0.776
SDI48115.1
Methyltransferase domain-containing protein.
  
     0.613
SDJ66690.1
Hypothetical protein.
  
     0.489
SDI54259.1
alpha-L-rhamnosidase.
  
 0.466
SDI65204.1
alpha-L-rhamnosidase.
  
 0.466
SDJ32158.1
Glycosyl hydrolases family 2, sugar binding domain.
  
 0.466
SDI56251.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.458
SDJ70703.1
Hypothetical protein.
  
     0.456
SDI70278.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.441
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.