STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ72125.1Transketolase. (318 aa)    
Predicted Functional Partners:
SDJ72176.1
Transketolase.
 0.999
tktA
Transketolase.
 0.996
SDJ72214.1
L-fucose isomerase.
 
    0.903
SDJ72052.1
Predicted lipoprotein.
 
     0.888
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.883
rbsB
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
    0.827
rbsC
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.810
rpiB
Ribose 5-phosphate isomerase B.
  
 
 0.788
rbsA2
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
  
    0.782
SDJ72245.1
Transcriptional regulator, DeoR family.
 
  
  0.761
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.