STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ73379.12'-5' RNA ligase. (227 aa)    
Predicted Functional Partners:
SDJ95190.1
Hypothetical protein.
  
     0.525
SDJ95225.1
Hypothetical protein.
  
     0.518
SDI60875.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.516
SDI60133.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
    
  0.510
SDJ73413.1
Protein of unknown function.
       0.508
SDI88096.1
Alpha,alpha-trehalase.
     
  0.499
SDJ95350.1
Hypothetical protein.
  
     0.488
SDK02805.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.482
SDJ01017.1
TonB-dependent Receptor Plug Domain.
  
     0.447
aspS-2
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
  
     0.442
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.