STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ75428.1Uncharacterized conserved protein YgbK, DUF1537 family. (462 aa)    
Predicted Functional Partners:
SDJ75462.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
     0.952
SDJ75392.1
Asp/Glu/Hydantoin racemase.
 
     0.919
SDJ75357.1
Bile acid:Na+ symporter, BASS family.
 
     0.803
SDI54718.1
Uncharacterized conserved protein YgbK, DUF1537 family.
  
     0.729
SDI65292.1
Protein of unknown function.
 
     0.502
SDI92399.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.501
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.497
SDI65122.1
Hypothetical protein.
 
     0.482
SDJ75493.1
Transcriptional regulator.
       0.440
SDJ75529.1
Protein of unknown function.
       0.440
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.