STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ79705.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (316 aa)    
Predicted Functional Partners:
SDI48049.1
Lipoprotein-releasing system permease protein.
     
 0.725
SDJ79509.1
NMT1/THI5 like.
 
     0.563
SDJ79608.1
Translation initiation factor 1 (eIF-1/SUI1).
       0.537
SDJ79653.1
GxxExxY protein.
  
    0.481
udp
Uridine phosphorylase.
       0.456
menE
O-succinylbenzoic acid--CoA ligase.
     
 0.421
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.