STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrB2Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); Belongs to the DNA photolyase family. (492 aa)    
Predicted Functional Partners:
SDK00718.1
TIGR03643 family protein.
 
     0.912
SDK00797.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
 
     0.728
SDK00679.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.697
SDK00839.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.680
SDK00585.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.673
folE
GTP cyclohydrolase I.
       0.601
SDJ05376.1
TIGR03643 family protein.
  
     0.529
SDK00877.1
Hypothetical protein.
 
    0.494
SDI52498.1
TspO and MBR related proteins.
 
  
 0.481
ybeY
rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.455
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.