Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDK00995.1tRNA_anti-like. (138 aa)    
Predicted Functional Partners:
SDK01047.1
Hypothetical protein.
 
     0.944
SDK00967.1
Hypothetical protein.
 
     0.891
SDK00922.1
YceI-like domain-containing protein; Belongs to the UPF0312 family.
 
     0.888
SDI67684.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.773
SDI67766.1
Hypothetical protein.
 
     0.768
SDI67647.1
YceI-like domain-containing protein.
  
     0.764
SDJ70297.1
Hypothetical protein.
 
     0.764
SDJ70222.1
YceI-like domain-containing protein.
  
     0.757
SDK01091.1
YceI-like domain-containing protein.
  
     0.752
SDJ70260.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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