STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK01415.1Iron complex transport system ATP-binding protein. (261 aa)    
Predicted Functional Partners:
SDJ71495.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.999
SDJ71525.1
Iron complex transport system substrate-binding protein.
 
 0.990
SDK00043.1
ABC-type Fe3+-hydroxamate transport system, substrate-binding protein.
  
 0.956
SDI52322.1
GxxExxY protein.
  
 0.817
SDI57990.1
GxxExxY protein.
  
 0.817
SDI74052.1
GxxExxY protein.
  
 0.817
SDJ79653.1
GxxExxY protein.
  
 0.817
SDK01454.1
ABC-type multidrug transport system, ATPase and permease component.
 
   
0.787
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.709
cobU
Adenosylcobinamide kinase.
 
  
  0.546
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.