Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDK01610.1Two component transcriptional regulator, LuxR family. (220 aa)    
Predicted Functional Partners:
SDI48782.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 
 0.950
SDK01573.1
Signal transduction histidine kinase.
 
  0.941
SDJ94765.1
PAS domain S-box-containing protein.
   
 0.920
SDI75168.1
Signal transduction histidine kinase.
 
 
 0.911
SDJ11966.1
PAS domain S-box-containing protein.
 
 0.882
SDJ11228.1
PAS domain-containing protein.
 
  0.860
SDI78343.1
Histidine kinase.
  
  0.841
SDJ71792.1
Histidine kinase.
 
  0.832
SDK08983.1
Hypothetical protein.
  
  0.829
SDK05645.1
PAS domain S-box-containing protein.
 
 0.787
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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