STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK01656.1Protein of unknown function. (137 aa)    
Predicted Functional Partners:
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.627
SDJ62237.1
Hypothetical protein.
  
     0.612
SDJ62363.1
Zinc transporter ZupT.
  
     0.534
SDK01610.1
Two component transcriptional regulator, LuxR family.
       0.528
SDJ85023.1
Protein of unknown function.
  
    0.524
SDJ84538.1
Helix-turn-helix.
  
     0.510
SDJ44951.1
RNA polymerase Rpb6.
 
     0.509
SDJ08009.1
Hypothetical protein.
  
     0.496
SDJ62211.1
Hypothetical protein.
  
     0.492
SDJ97765.1
Smr domain-containing protein.
  
     0.437
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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