STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK02717.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (203 aa)    
Predicted Functional Partners:
SDJ32713.1
Fumarylacetoacetate hydrolase.
  
  
  0.856
SDK02761.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
       0.829
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.708
sdhA
Succinate dehydrogenase subunit A.
  
 
  0.696
sdhB
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.673
SDK02680.1
DNA polymerase-3 subunit epsilon.
       0.654
SDK02805.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
       0.640
SDJ47195.1
Hypothetical protein.
  
 
  0.555
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.530
rpmG
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
       0.487
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.