STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK03583.1Outer membrane protein transport protein (OMPP1/FadL/TodX). (504 aa)    
Predicted Functional Partners:
SDK03625.1
Hypothetical protein.
 
     0.873
SDJ88419.1
Family of unknown function; Manually curated.
  
     0.764
SDI50632.1
Surface antigen.
  
   
 0.762
SDI70841.1
Hypothetical protein.
  
     0.744
SDI51567.1
Long-chain fatty acid transport protein.
  
     0.729
SDI71119.1
Protein involved in gliding motility SprE.
  
     0.728
SDI70816.1
Hypothetical protein.
  
     0.718
SDI88870.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.711
SDI79299.1
Hypothetical protein.
  
     0.709
SDJ88700.1
Hypothetical protein.
  
   
 0.706
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.