STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK06017.1Rhomboid protease GluP. (493 aa)    
Predicted Functional Partners:
ppiA-2
Peptidylprolyl isomerase.
       0.617
gldI
Protein involved in gliding motility GldI.
       0.613
fjo19
Phosphoesterase RecJ domain-containing protein.
       0.613
SDK06055.1
H+/Cl-antiporter ClcA.
       0.594
ppiA
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
       0.541
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.431
SDI93236.1
Sec-independent protein translocase protein TatA.
   
 
 0.431
SDJ88744.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.420
SDJ88783.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.420
SDK06102.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
       0.410
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.