STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK07654.1Putative MetA-pathway of phenol degradation. (318 aa)    
Predicted Functional Partners:
yghO
Hypothetical protein.
 
     0.815
SDK06191.1
Hypothetical protein.
  
     0.767
SDK07125.1
CarboxypepD_reg-like domain-containing protein.
  
     0.766
SDI75398.1
Putative DNA-binding domain-containing protein.
  
     0.762
SDJ63987.1
Hypothetical protein.
  
     0.762
SDJ92366.1
Hypothetical protein.
  
     0.762
SDI56691.1
Hypothetical protein.
  
     0.761
SDI62174.1
Hypothetical protein.
  
     0.759
SDI70816.1
Hypothetical protein.
  
     0.757
SDI61996.1
Protein of unknown function.
  
     0.756
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.