STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK07956.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
SDK01201.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SDJ95495.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SDJ35072.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.684
SDJ12725.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.672
SDK08008.1
Hypothetical protein.
       0.649
SDI98330.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.645
SDI73149.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.547
SDJ70478.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.536
uvrA1
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.527
SDI97816.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.501
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.