STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ74315.1Selenocysteine lyase/Cysteine desulfurase. (358 aa)    
Predicted Functional Partners:
SEA12297.1
Cysteine desulfuration protein SufE.
  
 0.860
SDZ90746.1
Cysteine desulfuration protein SufE.
  
 0.857
SEA12238.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
  
 0.857
SDZ73659.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.804
SDZ97935.1
Hypothetical protein.
    
   0.804
SEA37013.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.804
SEA55892.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.804
SEA12221.1
Fe-S cluster assembly protein SufB.
 
 
 0.798
SEA12260.1
Iron-regulated ABC transporter permease protein SufD.
 
 
 0.795
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.739
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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