STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ74912.1TonB-linked outer membrane protein, SusC/RagA family. (1049 aa)    
Predicted Functional Partners:
SDZ74925.1
Starch-binding associating with outer membrane.
 
     0.932
SEA55909.1
Starch-binding associating with outer membrane.
  
 
   0.629
SDZ74938.1
Protein of unknown function.
       0.610
SEA56294.1
Starch-binding associating with outer membrane.
  
 
   0.599
SDZ77325.1
Starch-binding associating with outer membrane.
  
 
   0.582
SDZ74965.1
Starch-binding associating with outer membrane.
     0.561
SEA45865.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.539
SEA34195.1
YD repeat-containing protein.
  
   0.537
SEA28505.1
Outer membrane transport energization protein TonB.
  
   0.528
SDZ92356.1
Starch-binding associating with outer membrane.
  
 
   0.520
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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