STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ76267.14-carboxymuconolactone decarboxylase. (175 aa)    
Predicted Functional Partners:
SDZ76253.1
Quinol monooxygenase YgiN.
  
 0.986
SDZ89212.1
4-carboxymuconolactone decarboxylase.
  
 0.971
SEA06851.1
Hypothetical protein.
     0.965
SDZ76240.1
Hypothetical protein.
 
     0.841
SDZ76282.1
Helix-turn-helix domain-containing protein.
 
   0.652
SEA46461.1
AraC-type DNA-binding protein.
  
  0.543
SDZ88746.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
     0.516
SDZ76209.1
4-oxalocrotonate tautomerase.
 
     0.469
SDZ87501.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.424
SEA21056.1
Protein N-acetyltransferase, RimJ/RimL family.
    
  0.413
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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