STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ76625.1TonB-linked outer membrane protein, SusC/RagA family. (1062 aa)    
Predicted Functional Partners:
SDZ76612.1
Fasciclin domain-containing protein.
 
     0.947
SDZ76636.1
SusD family protein.
 
     0.908
SDZ76597.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
 
     0.896
SDZ76588.1
Starch-binding associating with outer membrane.
 
 
   0.883
SDZ76561.1
Fasciclin domain-containing protein.
 
     0.827
SDZ76393.1
Starch-binding associating with outer membrane.
  
 
   0.768
SEA04836.1
Starch-binding associating with outer membrane.
  
 
   0.744
SDZ76418.1
Protein of unknown function.
  
     0.743
SEA02514.1
Starch-binding associating with outer membrane.
  
 
   0.732
SDZ73161.1
Starch-binding associating with outer membrane.
  
 
   0.725
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.