STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ77798.1RNA polymerase sigma-70 factor, ECF subfamily. (185 aa)    
Predicted Functional Partners:
SDZ77817.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
  0.876
SEA66302.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
  0.760
SDZ73831.1
FecR protein.
  
  0.755
SEA00967.1
FecR protein.
  
  0.755
SEA40879.1
Protein of unknown function.
  
  0.753
SEA02488.1
Protein of unknown function.
  
  0.751
SEA40721.1
FecR protein.
  
  0.747
SEA02264.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
  0.741
SEA47123.1
FecR protein.
  
  0.737
SEA48868.1
FecR protein.
  
  0.737
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
Server load: low (18%) [HD]