STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ80609.1TonB-dependent Receptor Plug Domain. (811 aa)    
Predicted Functional Partners:
SDZ83310.1
Putative porin.
  
  
  0.664
SEA68829.1
Hypothetical protein.
  
     0.644
SEA53051.1
Uncharacterized conserved protein RhaS, contains 28 RHS repeats.
  
     0.623
SDZ73940.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.616
SEA28505.1
Outer membrane transport energization protein TonB.
  
   0.604
SEA28468.1
Outer membrane transport energization protein TonB.
  
   0.591
SEA34195.1
YD repeat-containing protein.
  
   0.590
SDZ83054.1
Hypothetical protein.
  
     0.572
SDZ82989.1
Hypothetical protein.
  
     0.560
SDZ91230.1
Protein of unknown function.
  
     0.542
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.