STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA01982.1Outer membrane receptor proteins, mostly Fe transport. (824 aa)    
Predicted Functional Partners:
SEA02001.1
Protein of unknown function.
 
    0.898
SEA06469.1
Protein of unknown function.
 
    0.780
SEA01962.1
Uncharacterized iron-regulated membrane protein.
 
    0.765
SEA36866.1
Hypothetical protein.
 
   
 0.690
SEA35713.1
Starch-binding associating with outer membrane.
  
 
   0.649
SEA35687.1
Protein of unknown function.
  
     0.614
SEA36518.1
Starch-binding associating with outer membrane.
  
 
   0.534
SEA20937.1
Starch-binding associating with outer membrane.
  
 
   0.503
SEA64825.1
Phosphate-selective porin O and P.
   
 
 0.487
SEA20905.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.486
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.