Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ84356.1 | SEA51757.1 | SAMN05192529_102287 | SAMN05192529_12446 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | L-proline dehydrogenase. | 0.934 |
SDZ84356.1 | SEA53750.1 | SAMN05192529_102287 | SAMN05192529_12616 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Aspartate kinase. | 0.704 |
SDZ84356.1 | gltX | SAMN05192529_102287 | SAMN05192529_107110 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.877 |
SDZ84356.1 | proC | SAMN05192529_102287 | SAMN05192529_107109 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.881 |
SEA06671.1 | gltX | SAMN05192529_107108 | SAMN05192529_107110 | 5'-nucleotidase, lipoprotein e(P4) family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.500 |
SEA06671.1 | proC | SAMN05192529_107108 | SAMN05192529_107109 | 5'-nucleotidase, lipoprotein e(P4) family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.594 |
SEA06732.1 | gltX | SAMN05192529_107111 | SAMN05192529_107110 | Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.445 |
SEA06732.1 | proC | SAMN05192529_107111 | SAMN05192529_107109 | Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.507 |
SEA26801.1 | SEA51757.1 | SAMN05192529_11220 | SAMN05192529_12446 | Proline racemase; Belongs to the proline racemase family. | L-proline dehydrogenase. | 0.495 |
SEA26801.1 | proC | SAMN05192529_11220 | SAMN05192529_107109 | Proline racemase; Belongs to the proline racemase family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.874 |
SEA51757.1 | SDZ84356.1 | SAMN05192529_12446 | SAMN05192529_102287 | L-proline dehydrogenase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.934 |
SEA51757.1 | SEA26801.1 | SAMN05192529_12446 | SAMN05192529_11220 | L-proline dehydrogenase. | Proline racemase; Belongs to the proline racemase family. | 0.495 |
SEA51757.1 | gltX | SAMN05192529_12446 | SAMN05192529_107110 | L-proline dehydrogenase. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.418 |
SEA51757.1 | proC | SAMN05192529_12446 | SAMN05192529_107109 | L-proline dehydrogenase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.918 |
SEA53750.1 | SDZ84356.1 | SAMN05192529_12616 | SAMN05192529_102287 | Aspartate kinase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.704 |
SEA53750.1 | argH | SAMN05192529_12616 | SAMN05192529_1304 | Aspartate kinase. | Argininosuccinate lyase. | 0.605 |
SEA53750.1 | dapF | SAMN05192529_12616 | SAMN05192529_1329 | Aspartate kinase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.587 |
SEA53750.1 | proC | SAMN05192529_12616 | SAMN05192529_107109 | Aspartate kinase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.593 |
SEA53750.1 | thrB | SAMN05192529_12616 | SAMN05192529_12617 | Aspartate kinase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.999 |
argH | SEA53750.1 | SAMN05192529_1304 | SAMN05192529_12616 | Argininosuccinate lyase. | Aspartate kinase. | 0.605 |
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