STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA11241.1Major Facilitator Superfamily protein. (418 aa)    
Predicted Functional Partners:
SEA28485.1
Biopolymer transport protein ExbD.
  
 
   0.568
SDZ84046.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.557
kup
KUP system potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
  
   
 0.533
SEA28523.1
Biopolymer transport protein ExbD.
  
 
   0.517
SEA28560.1
Outer membrane transport energization protein ExbB.
  
   
 0.475
SEA28541.1
Biopolymer transport protein ExbD/TolR.
  
 
   0.471
SEA11224.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
       0.464
SEA11262.1
Smr domain-containing protein.
       0.411
SDZ74816.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
     0.406
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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