STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA20905.1TonB-linked outer membrane protein, SusC/RagA family. (1087 aa)    
Predicted Functional Partners:
SEA20937.1
Starch-binding associating with outer membrane.
 
     0.906
SEA36518.1
Starch-binding associating with outer membrane.
 
     0.785
SDZ99014.1
Starch-binding associating with outer membrane.
  
     0.752
SEA02533.1
SusD family protein.
  
     0.725
SEA55474.1
TonB-dependent Receptor Plug Domain.
  
 
  0.697
SEA37866.1
Starch-binding associating with outer membrane.
  
     0.689
SEA40755.1
Starch-binding associating with outer membrane.
  
     0.687
SEA56294.1
Starch-binding associating with outer membrane.
  
     0.687
SEA36665.1
Starch-binding associating with outer membrane.
  
     0.686
SEA49710.1
Starch-binding associating with outer membrane.
  
     0.684
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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