STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA20937.1Starch-binding associating with outer membrane. (619 aa)    
Predicted Functional Partners:
SEA20905.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.906
SEA36535.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.854
SDZ73842.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.763
SEA36653.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.739
SDZ92376.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.709
SDZ99032.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.708
SEA35733.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.706
SEA40735.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.696
SEA07223.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.688
SEA40844.1
Glycosyl hydrolase family 76.
  
     0.679
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.