Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ74037.1 | SEA19161.1 | SAMN05192529_101113 | SAMN05192529_11045 | Putative zinc finger/helix-turn-helix protein, YgiT family. | Arsenate reductase; Belongs to the ArsC family. | 0.412 |
SDZ74037.1 | ahcY | SAMN05192529_101113 | SAMN05192529_11044 | Putative zinc finger/helix-turn-helix protein, YgiT family. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.473 |
SDZ87501.1 | SDZ92121.1 | SAMN05192529_10396 | SAMN05192529_10484 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb6. | 0.999 |
SDZ87501.1 | SEA19161.1 | SAMN05192529_10396 | SAMN05192529_11045 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Arsenate reductase; Belongs to the ArsC family. | 0.899 |
SDZ87501.1 | nusB | SAMN05192529_10396 | SAMN05192529_11046 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.468 |
SDZ87501.1 | rpoA | SAMN05192529_10396 | SAMN05192529_11389 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDZ87501.1 | rpoB | SAMN05192529_10396 | SAMN05192529_11297 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDZ87501.1 | rpoC | SAMN05192529_10396 | SAMN05192529_11851 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDZ92121.1 | SDZ87501.1 | SAMN05192529_10484 | SAMN05192529_10396 | RNA polymerase Rpb6. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.999 |
SDZ92121.1 | SEA19161.1 | SAMN05192529_10484 | SAMN05192529_11045 | RNA polymerase Rpb6. | Arsenate reductase; Belongs to the ArsC family. | 0.678 |
SDZ92121.1 | nusB | SAMN05192529_10484 | SAMN05192529_11046 | RNA polymerase Rpb6. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.898 |
SDZ92121.1 | rpoA | SAMN05192529_10484 | SAMN05192529_11389 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDZ92121.1 | rpoB | SAMN05192529_10484 | SAMN05192529_11297 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDZ92121.1 | rpoC | SAMN05192529_10484 | SAMN05192529_11851 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SEA19161.1 | SDZ74037.1 | SAMN05192529_11045 | SAMN05192529_101113 | Arsenate reductase; Belongs to the ArsC family. | Putative zinc finger/helix-turn-helix protein, YgiT family. | 0.412 |
SEA19161.1 | SDZ87501.1 | SAMN05192529_11045 | SAMN05192529_10396 | Arsenate reductase; Belongs to the ArsC family. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.899 |
SEA19161.1 | SDZ92121.1 | SAMN05192529_11045 | SAMN05192529_10484 | Arsenate reductase; Belongs to the ArsC family. | RNA polymerase Rpb6. | 0.678 |
SEA19161.1 | ahcY | SAMN05192529_11045 | SAMN05192529_11044 | Arsenate reductase; Belongs to the ArsC family. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.542 |
SEA19161.1 | nusB | SAMN05192529_11045 | SAMN05192529_11046 | Arsenate reductase; Belongs to the ArsC family. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.436 |
SEA19161.1 | rpoA | SAMN05192529_11045 | SAMN05192529_11389 | Arsenate reductase; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.900 |
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