STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA40919.1Starch-binding associating with outer membrane. (554 aa)    
Predicted Functional Partners:
SEA40900.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.946
SEA36653.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.854
SDZ73842.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.842
SDZ73448.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.832
SEA05513.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.832
SEA66288.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.829
SDZ76383.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.811
SDZ86321.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.803
SDZ75669.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.802
SEA49563.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.801
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.