Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ84167.1 | SDZ86427.1 | SAMN05192529_102273 | SAMN05192529_10323 | Small subunit ribosomal protein S1. | Trigger factor. | 0.902 |
SDZ84167.1 | SDZ86489.1 | SAMN05192529_102273 | SAMN05192529_10327 | Small subunit ribosomal protein S1. | LSU ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family. | 0.941 |
SDZ84167.1 | frr | SAMN05192529_102273 | SAMN05192529_101416 | Small subunit ribosomal protein S1. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.452 |
SDZ84167.1 | fusA | SAMN05192529_102273 | SAMN05192529_10238 | Small subunit ribosomal protein S1. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.973 |
SDZ84167.1 | rplS | SAMN05192529_102273 | SAMN05192529_10134 | Small subunit ribosomal protein S1. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.988 |
SDZ84167.1 | rplT | SAMN05192529_102273 | SAMN05192529_102276 | Small subunit ribosomal protein S1. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.969 |
SDZ84167.1 | rplY | SAMN05192529_102273 | SAMN05192529_105140 | Small subunit ribosomal protein S1. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.965 |
SDZ84167.1 | rpmF | SAMN05192529_102273 | SAMN05192529_105113 | Small subunit ribosomal protein S1. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.947 |
SDZ84167.1 | rpsG | SAMN05192529_102273 | SAMN05192529_12240 | Small subunit ribosomal protein S1. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
SDZ84167.1 | rpsO | SAMN05192529_102273 | SAMN05192529_10424 | Small subunit ribosomal protein S1. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
SDZ86427.1 | SDZ84167.1 | SAMN05192529_10323 | SAMN05192529_102273 | Trigger factor. | Small subunit ribosomal protein S1. | 0.902 |
SDZ86427.1 | SDZ86489.1 | SAMN05192529_10323 | SAMN05192529_10327 | Trigger factor. | LSU ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family. | 0.828 |
SDZ86427.1 | frr | SAMN05192529_10323 | SAMN05192529_101416 | Trigger factor. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.857 |
SDZ86427.1 | fusA | SAMN05192529_10323 | SAMN05192529_10238 | Trigger factor. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.831 |
SDZ86427.1 | rplS | SAMN05192529_10323 | SAMN05192529_10134 | Trigger factor. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.968 |
SDZ86427.1 | rplT | SAMN05192529_10323 | SAMN05192529_102276 | Trigger factor. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.942 |
SDZ86427.1 | rplY | SAMN05192529_10323 | SAMN05192529_105140 | Trigger factor. | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.962 |
SDZ86427.1 | rpmF | SAMN05192529_10323 | SAMN05192529_105113 | Trigger factor. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.961 |
SDZ86427.1 | rpsG | SAMN05192529_10323 | SAMN05192529_12240 | Trigger factor. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
SDZ86427.1 | rpsO | SAMN05192529_10323 | SAMN05192529_10424 | Trigger factor. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.956 |
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