STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA55924.1TonB-linked outer membrane protein, SusC/RagA family. (1093 aa)    
Predicted Functional Partners:
SEA55909.1
Starch-binding associating with outer membrane.
     0.937
SEA37866.1
Starch-binding associating with outer membrane.
 
     0.745
SDZ73848.1
Starch-binding associating with outer membrane.
 
     0.718
SEA36665.1
Starch-binding associating with outer membrane.
 
     0.700
SEA49539.1
Starch-binding associating with outer membrane.
 
     0.667
SEA07024.1
Starch-binding associating with outer membrane.
  
     0.632
SDZ77325.1
Starch-binding associating with outer membrane.
  
     0.622
SDZ80231.1
Hypothetical protein.
  
   0.577
SDZ74925.1
Starch-binding associating with outer membrane.
  
     0.574
SEA66269.1
Starch-binding associating with outer membrane.
  
     0.555
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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