STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO78444.12-dehydro-3-deoxy-D-arabinonate dehydratase. (283 aa)    
Predicted Functional Partners:
SEN61343.1
NADP-dependent aldehyde dehydrogenase.
 
 
 0.878
SEN62899.1
4-hydroxy-tetrahydrodipicolinate synthase.
    
  0.827
SEO78465.1
Hypothetical protein.
       0.780
SEO78426.1
Protein of unknown function.
       0.778
SEO53406.1
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.725
SEO78490.1
MFS transporter, FHS family, L-fucose permease.
       0.660
SEO78520.1
L-fucose dehydrogenase.
       0.608
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
    
 0.492
SEO98674.1
Cupin domain-containing protein.
  
     0.485
SEO89871.1
Hypothetical protein.
  
     0.452
Your Current Organism:
Mucilaginibacter gossypiicola
NCBI taxonomy Id: 551995
Other names: KCTC 22379, M. gossypiicola, Mucilaginibacter gossypiicola Madhaiyan et al. 2010, NCIMB 14471, Pedobacter sp. Gh-48, strain Gh-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.