STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF71984.1Predicted dehydrogenase. (398 aa)    
Predicted Functional Partners:
SDF71950.1
Hypothetical protein.
       0.732
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.701
SDI54465.1
NIPSNAP protein.
  
     0.608
SDH63479.1
NIPSNAP protein.
  
     0.564
SDG60820.1
Phospholipase C.
  
     0.497
SDH61866.1
Sugar phosphate isomerase/epimerase.
 
  
 0.492
SDF71914.1
Polysaccharide deacetylase.
       0.490
SDH96210.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.485
SDH88885.1
Protein of unknown function.
  
     0.466
SDG98253.1
Hypothetical protein.
  
     0.464
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.