STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF72324.1Hypothetical protein. (689 aa)    
Predicted Functional Partners:
SDI49766.1
YbbR-like protein.
 
  
 0.789
SDF72296.1
SPFH domain / Band 7 family protein.
       0.676
SDF72220.1
Hypothetical protein.
       0.671
SDI65412.1
Aspartyl protease.
  
     0.605
SDG71043.1
pRiA4b ORF-3-like protein.
  
     0.577
SDI51224.1
Protein of unknown function.
  
     0.548
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.544
SDF72261.1
Hypothetical protein.
       0.539
SDI14450.1
Tetratricopeptide repeat-containing protein.
  
     0.520
RsmD
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
  
     0.494
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.