STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF76459.13-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. (479 aa)    
Predicted Functional Partners:
SDF76635.1
Spore coat polysaccharide biosynthesis protein SpsF.
 
  
 0.981
SDF76668.1
Hypothetical protein.
 
  
 0.965
SDF76493.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
 0.946
SDF76526.1
Glutamate-1-semialdehyde 2,1-aminomutase/spore coat polysaccharide biosynthesis protein SpsF; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.935
SDG60429.1
Spore coat polysaccharide biosynthesis protein SpsF.
 
  
 0.933
RfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.909
SDF76371.1
Quaternary ammonium compound-resistance protein SugE.
 
     0.893
SDF76589.1
Transketolase subunit A.
 
     0.879
SDF76554.1
Transketolase.
 
     0.872
SDF76409.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
 
     0.866
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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