STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF82671.1Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (125 aa)    
Predicted Functional Partners:
SDI42478.1
Serine/threonine-protein kinase RsbW.
 
 
 0.986
SDG99459.1
Hypothetical protein.
  
 
 0.963
SDH26049.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 
 0.957
SDH65587.1
Signal transduction histidine kinase.
  
  
 0.953
SDG99542.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
 
 0.893
SDF80089.1
Signal transduction histidine kinase.
  
  
 0.883
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
    0.795
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.728
SDG40045.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
   0.722
SDG61416.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
   0.722
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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