STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF86191.1AraC-like ligand binding domain-containing protein. (338 aa)    
Predicted Functional Partners:
SDF86377.1
Hypothetical protein.
 
    0.853
SDI69187.1
Tfp pilus assembly protein PilF.
 
    0.787
SDH61267.1
Helix-turn-helix domain-containing protein.
  
   0.749
SDG36483.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.628
SDH67538.1
Transcriptional regulator, AraC family.
  
   0.606
SDH73951.1
AraC-type DNA-binding protein.
  
   0.572
SDH20732.1
AraC-like ligand binding domain-containing protein.
  
   0.570
SDH47453.1
Helix-turn-helix domain-containing protein.
  
   0.566
SDI60973.1
AraC-type DNA-binding protein.
  
   0.538
SDG65450.1
AraC-type DNA-binding protein.
  
   0.517
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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