STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG18248.1BlaR1 peptidase M56. (528 aa)    
Predicted Functional Partners:
SDG18214.1
Predicted transcriptional regulator.
 
  
 0.963
SDG68816.1
Predicted transcriptional regulator.
 
  
 0.829
SDI75221.1
Predicted transcriptional regulator.
 
  
 0.682
SDF68806.1
Predicted transcriptional regulator.
 
  
 0.640
SDI60664.1
Predicted transcriptional regulator.
 
  
 0.622
SDF79423.1
Predicted transcriptional regulator.
 
  
 0.562
SDG34813.1
Outer membrane protein OmpA.
  
 
 0.561
SDH28045.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
 
 0.544
SDG18173.1
PAP2 superfamily protein.
  
    0.485
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.450
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.