STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG18471.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (418 aa)    
Predicted Functional Partners:
SDG10438.1
Hypothetical protein.
 
   
 0.769
SDH30251.1
DNA binding domain-containing protein, excisionase family.
 
   
 0.768
SDI81174.1
Helix-turn-helix domain-containing protein.
 
   
 0.768
SDH47143.1
Helix-turn-helix domain-containing protein.
 
   
 0.767
SDH29784.1
RteC protein.
  
     0.700
SDH53082.1
RteC protein.
  
     0.686
SDH49100.1
RteC protein.
  
     0.681
SDG10737.1
RteC protein.
  
     0.677
SDH13192.1
Toprim-like.
 
  
 0.522
SDH76635.1
Putative membrane protein.
  
     0.507
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.