STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG39068.1TonB-linked outer membrane protein, SusC/RagA family. (1052 aa)    
Predicted Functional Partners:
SDG39102.1
Starch-binding associating with outer membrane.
     0.944
SDG38855.1
Regulator of RNase E activity RraA.
 
     0.786
SDH01435.1
Starch-binding associating with outer membrane.
     0.743
SDH07587.1
Starch-binding associating with outer membrane.
 
     0.736
SDG38007.1
Starch-binding associating with outer membrane.
  
 
   0.721
SDH07631.1
Starch-binding associating with outer membrane.
 
     0.704
SDF72629.1
Starch-binding associating with outer membrane.
  
 
   0.686
SDH15159.1
Starch-binding associating with outer membrane.
  
 
   0.678
SDH91925.1
Starch-binding associating with outer membrane.
  
 
   0.644
SDF68760.1
TonB protein C-terminal.
 
 
 0.636
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.