STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG70064.1CDP-glucose 4,6-dehydratase. (359 aa)    
Predicted Functional Partners:
SDG70031.1
Glucose-1-phosphate cytidylyltransferase.
 
 
 0.971
SDG70097.1
CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.926
SDG70134.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.751
SDG70165.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.741
SDG69993.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
  
 0.702
SDG70194.1
Acetyltransferase (isoleucine patch superfamily).
  
  
 0.595
SDG70232.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.589
SDG70262.1
Glycosyltransferase, GT2 family.
  
    0.581
SDG70293.1
Hypothetical protein.
       0.568
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.558
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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