SDH36212.1 protein (Mucilaginibacter gossypii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDH36212.1

N-ethylmaleimide reductase. (365 aa)

Predicted Functional Partners:

SDH36168.1

0.695

SDH36124.1

0.654

SDH36050.1

0.587

SDH36254.1

0.525

SDG15799.1

0.458

SDG34505.1

0.458

SDG15839.1

0.410

SDG34469.1

0.410

SDG16002.1

0.401

Your Current Organism:

Mucilaginibacter gossypii

NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG15799.1	SDG15839.1	SAMN05192573_102400	SAMN05192573_102401	Electron transfer flavoprotein beta subunit.	Electron transfer flavoprotein alpha subunit apoprotein.	0.998
SDG15799.1	SDG16002.1	SAMN05192573_102400	SAMN05192573_102405	Electron transfer flavoprotein beta subunit.	3-hydroxyacyl-CoA dehydrogenase.	0.914
SDG15799.1	SDG34469.1	SAMN05192573_102400	SAMN05192573_103156	Electron transfer flavoprotein beta subunit.	Electron transfer flavoprotein alpha subunit apoprotein.	0.997
SDG15799.1	SDH36212.1	SAMN05192573_102400	SAMN05192573_10948	Electron transfer flavoprotein beta subunit.	N-ethylmaleimide reductase.	0.458
SDG15839.1	SDG15799.1	SAMN05192573_102401	SAMN05192573_102400	Electron transfer flavoprotein alpha subunit apoprotein.	Electron transfer flavoprotein beta subunit.	0.998
SDG15839.1	SDG16002.1	SAMN05192573_102401	SAMN05192573_102405	Electron transfer flavoprotein alpha subunit apoprotein.	3-hydroxyacyl-CoA dehydrogenase.	0.796
SDG15839.1	SDG34505.1	SAMN05192573_102401	SAMN05192573_103157	Electron transfer flavoprotein alpha subunit apoprotein.	Electron transfer flavoprotein beta subunit.	0.997
SDG15839.1	SDH36212.1	SAMN05192573_102401	SAMN05192573_10948	Electron transfer flavoprotein alpha subunit apoprotein.	N-ethylmaleimide reductase.	0.410
SDG16002.1	SDG15799.1	SAMN05192573_102405	SAMN05192573_102400	3-hydroxyacyl-CoA dehydrogenase.	Electron transfer flavoprotein beta subunit.	0.914
SDG16002.1	SDG15839.1	SAMN05192573_102405	SAMN05192573_102401	3-hydroxyacyl-CoA dehydrogenase.	Electron transfer flavoprotein alpha subunit apoprotein.	0.796
SDG16002.1	SDG34469.1	SAMN05192573_102405	SAMN05192573_103156	3-hydroxyacyl-CoA dehydrogenase.	Electron transfer flavoprotein alpha subunit apoprotein.	0.735
SDG16002.1	SDG34505.1	SAMN05192573_102405	SAMN05192573_103157	3-hydroxyacyl-CoA dehydrogenase.	Electron transfer flavoprotein beta subunit.	0.901
SDG16002.1	SDH36212.1	SAMN05192573_102405	SAMN05192573_10948	3-hydroxyacyl-CoA dehydrogenase.	N-ethylmaleimide reductase.	0.401
SDG34469.1	SDG15799.1	SAMN05192573_103156	SAMN05192573_102400	Electron transfer flavoprotein alpha subunit apoprotein.	Electron transfer flavoprotein beta subunit.	0.997
SDG34469.1	SDG16002.1	SAMN05192573_103156	SAMN05192573_102405	Electron transfer flavoprotein alpha subunit apoprotein.	3-hydroxyacyl-CoA dehydrogenase.	0.735
SDG34469.1	SDG34505.1	SAMN05192573_103156	SAMN05192573_103157	Electron transfer flavoprotein alpha subunit apoprotein.	Electron transfer flavoprotein beta subunit.	0.999
SDG34469.1	SDH36212.1	SAMN05192573_103156	SAMN05192573_10948	Electron transfer flavoprotein alpha subunit apoprotein.	N-ethylmaleimide reductase.	0.410
SDG34505.1	SDG15839.1	SAMN05192573_103157	SAMN05192573_102401	Electron transfer flavoprotein beta subunit.	Electron transfer flavoprotein alpha subunit apoprotein.	0.997
SDG34505.1	SDG16002.1	SAMN05192573_103157	SAMN05192573_102405	Electron transfer flavoprotein beta subunit.	3-hydroxyacyl-CoA dehydrogenase.	0.901
SDG34505.1	SDG34469.1	SAMN05192573_103157	SAMN05192573_103156	Electron transfer flavoprotein beta subunit.	Electron transfer flavoprotein alpha subunit apoprotein.	0.999