STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH52670.1Type IV secretory system Conjugative DNA transfer. (685 aa)    
Predicted Functional Partners:
SDH52615.1
Hypothetical protein.
 
     0.799
SDG10862.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.788
SDH53251.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.788
SDH48910.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.788
SDI80835.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.788
SDG10642.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.785
SDH13115.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.785
SDH47354.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.785
SDH29928.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.782
SDH48620.1
Bacteroides conjugative transposon TraK protein.
 
     0.781
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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