STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH55040.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (551 aa)    
Predicted Functional Partners:
SDH54998.1
Lysophospholipase L1.
 
     0.948
SDH55084.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.915
SDH92443.1
Pectinesterase.
 
     0.769
SDH92476.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
    0.750
SDG29436.1
Lysophospholipase L1.
  
    0.720
SDH92408.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.712
SDG29472.1
Lysophospholipase L1.
  
    0.689
SDI73955.1
Lysophospholipase L1.
  
     0.687
SDG29359.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
    0.619
SDG19508.1
Glycosyl hydrolase family 115.
  
     0.606
Your Current Organism:
Mucilaginibacter gossypii
NCBI taxonomy Id: 551996
Other names: KCTC 22380, M. gossypii, Mucilaginibacter gossypii Madhaiyan et al. 2010, NCIMB 14470, Pedobacter sp. Gh-67, strain Gh-67
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